Small-scale production control systems for smart manufacturing are becoming increasingly necessary as the manufacturing industry seeks to maximize manufacturing efficiency as the demand for customized product production increases. Correspondingly, the development of an embedded system to realize this capability is becoming important. In this study, we developed an embedded system based on an open source system that is cheaper than a widely applied programmable logic controller (PLC)-based production control system that is easier to install, configure, and process than a conventional relay control panel. This embedded system is system is based on a low-power, high-performance Cortex M4 processor and can be applied to smart manufacturing. It is designed to improve the development environment and compatibility of existing PLCs, control small-scale production systems, and enable data collection through heterogeneous communication. The real-time response characteristics were confirmed through an operation test for input/output control and data collection, and it was confirmed that they can be used in industrial sites.